We are pleased to announce a major upgrade to human AIRR-seq data on VDJbase. We have added approximately 1000 new repertoires, bringing the total to 2,345. For improved consistency and reproducibility, all repertoires have been processed with a new pipeline, processing from source reads wherever possible. IG AIRR-seq is now annotated with the AIRR-C Reference Set. All annotated repertoires are now available for download.
No login is necessary to download: you can download individual repertoires by clicking on the folder icon in the Samples page, or find a script to download all repertoires for a study on the Explore AIRR-seq Data page – see graphics below. To prevent abuse, we have rate-limited download requests, so please be reasonable in your requests and let us know if you encounter problems. Repertoire data is served by a new service we call the Minimal AIRR Data Commons: this is a service which implements a subset of the AIRR Data Commons API, with enhancements to improve the ease of downloading entire repertoires. For all repertoires we provide metadata in AIRR Standards format.
Look out soon for a significant update of genomic data, and for an update of the online analyses!
If you use our data, please cite us.