{"id":44,"date":"2021-10-08T16:05:24","date_gmt":"2021-10-08T15:05:24","guid":{"rendered":"https:\/\/wordpress.vdjbase.org\/?p=44"},"modified":"2025-08-15T15:26:57","modified_gmt":"2025-08-15T14:26:57","slug":"submitting-inferences-to-ogrdb","status":"publish","type":"post","link":"https:\/\/wordpress.vdjbase.org\/index.php\/ogrdb\/submitting-inferences-to-ogrdb\/","title":{"rendered":"Submitting inferences to OGRDB"},"content":{"rendered":"\n<p>If you have identified previously undocumented alleles in AIRR-Seq repertoires, we invite you to submit them to OGRDB for review and possible inclusion in published germline reference sets.<\/p>\n\n\n\n<p>At present, you can submit human IG or TR V-sequences for consideration. We hope to extend this to cover more species and loci soon.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">Qualification criteria<\/h3>\n\n\n\n<p>To be considered, submissions must meet the following criteria:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>The repertoire sequences from which inferences are made must be deposited in a long-term archive, and the repertoires must be described in a publication in a peer-reviewed journal. <\/li>\n\n\n\n<li>Amplification primers must capture the complete V(D)J coding region and must not bind within the V-region.<\/li>\n\n\n\n<li>Inferences of the novel alleles must be made with a tool that is publicly available, validated and described in a peer-reviewed journal.<\/li>\n<\/ul>\n\n\n\n<p>Further information can be found in <a href=\"https:\/\/www.frontiersin.org\/article\/10.3389\/fimmu.2019.00435\"><em>Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming<\/em><\/a>.<\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Submission process<\/h4>\n\n\n\n<p>Please feel free to <a href=\"mailto:william@lees.org.uk\">contact us <\/a>at any point before or during submission for advice or help. We welcome your submission and will work with you to ensure its success.<\/p>\n\n\n\n<p>Before submission, please process the annotated repertoire(s) with <a href=\"https:\/\/github.com\/airr-community\/ogrdbstats\">OGRDBstats<\/a>: this will produce a csv file and a pdf file for each repertoire. You will need these files during submission. Then follow the steps outlined <a href=\"https:\/\/wordpress.vdjbase.org\/index.php\/vdjbase\/creating-an-ogrdb-submission\/\">here<\/a> to create the submission in OGRDB.<\/p>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>If you have identified previously undocumented alleles in AIRR-Seq repertoires, we invite you to submit them to OGRDB for review and possible inclusion in published germline reference sets. At present, you can submit human IG or TR V-sequences for consideration. We hope to extend this to cover more species and loci soon. Qualification criteria To&hellip; <a class=\"more-link\" href=\"https:\/\/wordpress.vdjbase.org\/index.php\/ogrdb\/submitting-inferences-to-ogrdb\/\">Continue reading <span class=\"screen-reader-text\">Submitting inferences to OGRDB<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[6],"tags":[20],"class_list":["post-44","post","type-post","status-publish","format-standard","hentry","category-ogrdb","tag-submission","entry"],"_links":{"self":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/44","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/comments?post=44"}],"version-history":[{"count":12,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/44\/revisions"}],"predecessor-version":[{"id":234,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/44\/revisions\/234"}],"wp:attachment":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/media?parent=44"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/categories?post=44"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/tags?post=44"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}