{"id":31,"date":"2021-09-15T16:19:59","date_gmt":"2021-09-15T15:19:59","guid":{"rendered":"https:\/\/wordpress.vdjbase.org\/?p=31"},"modified":"2025-08-15T15:28:32","modified_gmt":"2025-08-15T14:28:32","slug":"human-trb-airr-seq-datasets-added","status":"publish","type":"post","link":"https:\/\/wordpress.vdjbase.org\/index.php\/vdjbase_news\/human-trb-airr-seq-datasets-added\/","title":{"rendered":"Human TRB AIRR-Seq datasets added"},"content":{"rendered":"\n<p>VDJbase now has a dataset based on TRB AIRR-Seq repertoires. This data is analysed in <a href=\"https:\/\/genomemedicine.biomedcentral.com\/articles\/10.1186\/s13073-021-01008-4\">Omer et al., 2022<\/a>, in which we demonstrate that methods developed for the inference of allelic variants in the B cell repertoire can also be applied to the T cell repertoire. Many T cell studies sequence just a short fraction of the V-region, and we include, alongside full-length studies, two large studies employing shorter reads. Details can be found on the <a rel=\"noreferrer noopener\" href=\"https:\/\/vdjbase.org\/datarep\" target=\"_blank\">Explore Data<\/a> page, by selecting Human TRB at the top of the page. For an explanation of the allele names used in the short-read studies, see <a href=\"https:\/\/wordpress.vdjbase.org\/index.php\/vdjbase_help\/airr-seq-data-allele-names\/\" data-type=\"post\" data-id=\"12\">AIRR-Seq data: Allele Names<\/a>.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>VDJbase now has a dataset based on TRB AIRR-Seq repertoires. This data is analysed in Omer et al., 2022, in which we demonstrate that methods developed for the inference of allelic variants in the B cell repertoire can also be applied to the T cell repertoire. Many T cell studies sequence just a short fraction&hellip; <a class=\"more-link\" href=\"https:\/\/wordpress.vdjbase.org\/index.php\/vdjbase_news\/human-trb-airr-seq-datasets-added\/\">Continue reading <span class=\"screen-reader-text\">Human TRB AIRR-Seq datasets added<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[11],"tags":[17],"class_list":["post-31","post","type-post","status-publish","format-standard","hentry","category-vdjbase_news","tag-data_updates","entry"],"_links":{"self":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/31","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/comments?post=31"}],"version-history":[{"count":6,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/31\/revisions"}],"predecessor-version":[{"id":137,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/31\/revisions\/137"}],"wp:attachment":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/media?parent=31"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/categories?post=31"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/tags?post=31"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}