{"id":268,"date":"2025-07-04T16:14:47","date_gmt":"2025-07-04T15:14:47","guid":{"rendered":"https:\/\/wordpress.vdjbase.org\/?p=268"},"modified":"2025-08-15T12:43:12","modified_gmt":"2025-08-15T11:43:12","slug":"airr-seq-data-upgraded","status":"publish","type":"post","link":"https:\/\/wordpress.vdjbase.org\/index.php\/vdjbase_news\/airr-seq-data-upgraded\/","title":{"rendered":"AIRR-Seq Data Upgraded: Repertoires downloadable!"},"content":{"rendered":"\n

We are pleased to announce a major upgrade to human AIRR-seq data on VDJbase. We have added approximately 1000 new repertoires, bringing the total to 2,345<\/strong>. For improved consistency and reproducibility, all repertoires have been processed with a new pipeline, processing from source reads wherever possible. IG AIRR-seq is now annotated with the AIRR-C Reference Set<\/a>. All annotated repertoires are now available for download<\/strong>. <\/p>\n\n\n\n

No login is necessary to download: you can download individual repertoires by clicking on the folder icon in the Samples page, or find a script to download all repertoires for a study on the Explore AIRR-seq Data page – see graphics below. To prevent abuse, we have rate-limited download requests, so please be reasonable in your requests and let us know if you encounter problems. Repertoire data is served by a new service we call the Minimal AIRR Data Commons<\/strong><\/a>: <\/strong>this is a service which implements a subset of the AIRR Data Commons API<\/a>, with enhancements to improve the ease of downloading entire repertoires. For all repertoires we provide metadata in AIRR Standards<\/a> format.<\/p>\n\n\n\n

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Look out soon for a significant update of genomic data, and for an update of the online analyses!<\/p>\n\n\n\n

If you use our data, please cite us<\/a>.<\/p>\n\n\n\n

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<\/figure>\n","protected":false},"excerpt":{"rendered":"

We are pleased to announce a major upgrade to human AIRR-seq data on VDJbase. We have added approximately 1000 new repertoires, bringing the total to 2,345. For improved consistency and reproducibility, all repertoires have been processed with a new pipeline, processing from source reads wherever possible. IG AIRR-seq is now annotated with the AIRR-C Reference… Continue reading AIRR-Seq Data Upgraded: Repertoires downloadable!<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[11],"tags":[17,18],"class_list":["post-268","post","type-post","status-publish","format-standard","hentry","category-vdjbase_news","tag-data_updates","tag-site_updates","entry"],"_links":{"self":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/268","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/comments?post=268"}],"version-history":[{"count":7,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/268\/revisions"}],"predecessor-version":[{"id":280,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/268\/revisions\/280"}],"wp:attachment":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/media?parent=268"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/categories?post=268"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/tags?post=268"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}