{"id":265,"date":"2024-10-18T16:06:21","date_gmt":"2024-10-18T15:06:21","guid":{"rendered":"https:\/\/wordpress.vdjbase.org\/?p=265"},"modified":"2025-08-15T12:43:24","modified_gmt":"2025-08-15T11:43:24","slug":"additional-support-for-germline-sets","status":"publish","type":"post","link":"https:\/\/wordpress.vdjbase.org\/index.php\/ogrdb_news\/additional-support-for-germline-sets\/","title":{"rendered":"Additional support for germline sets"},"content":{"rendered":"\n<p>We have created <a href=\"https:\/\/williamdlees.github.io\/receptor_utils\/_build\/html\/index.html\">step-by-step walk-throughs<\/a> showing how to use the AIRR-C germline sets with local installations of <a href=\"https:\/\/ncbi.github.io\/igblast\/\">IgBLAST <\/a>and <a href=\"https:\/\/mixcr.com\">MiXCR<\/a>.<\/p>\n\n\n\n<p>These tools make use of <a href=\"https:\/\/williamdlees.github.io\/receptor_utils\/_build\/html\/download_germline_set.html\">download_germline_set<\/a>, which is a powerful command-line utility which can be used to download sets in various formats, and explore the sets and versions available in OGRDB. It can even create the custom .ndm and .aux files required by IgBLAST.<\/p>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>We have created step-by-step walk-throughs showing how to use the AIRR-C germline sets with local installations of IgBLAST and MiXCR. These tools make use of download_germline_set, which is a powerful command-line utility which can be used to download sets in various formats, and explore the sets and versions available in OGRDB. It can even create&hellip; <a class=\"more-link\" href=\"https:\/\/wordpress.vdjbase.org\/index.php\/ogrdb_news\/additional-support-for-germline-sets\/\">Continue reading <span class=\"screen-reader-text\">Additional support for germline sets<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[13],"tags":[18],"class_list":["post-265","post","type-post","status-publish","format-standard","hentry","category-ogrdb_news","tag-site_updates","entry"],"_links":{"self":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/265","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/comments?post=265"}],"version-history":[{"count":1,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/265\/revisions"}],"predecessor-version":[{"id":266,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/265\/revisions\/266"}],"wp:attachment":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/media?parent=265"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/categories?post=265"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/tags?post=265"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}