{"id":146,"date":"2022-07-10T08:28:31","date_gmt":"2022-07-10T07:28:31","guid":{"rendered":"https:\/\/wordpress.vdjbase.org\/?p=146"},"modified":"2025-08-15T15:23:46","modified_gmt":"2025-08-15T14:23:46","slug":"tools-for-working-with-germline-sets","status":"publish","type":"post","link":"https:\/\/wordpress.vdjbase.org\/index.php\/ogrdb_news\/tools-for-working-with-germline-sets\/","title":{"rendered":"Tools for working with germline sets"},"content":{"rendered":"\n<p>The AIRR-C standard germline sets published in OGRDB use a new naming scheme: please see <a href=\"https:\/\/wordpress.vdjbase.org\/wp-content\/uploads\/2022\/09\/IMMREP22-Next-generation-germline-reference-sets-for-B-cell-and-T-cell-repertoire-sequencing.pdf\">this poster<\/a> for details. Because the format of these names may not be compatible with all current pipeline tools, we have released <a href=\"https:\/\/github.com\/airr-community\/receptor-germline-tools\">receptor-germline-tools<\/a>: utilities that can convert to more compatible subgroup-identifier-allele form. We have also updated the FASTA files downloadable from OGRDB to use this more compatible format. For more details on the naming format, please see <a href=\"https:\/\/github.com\/airr-community\/receptor-germline-tools\">this README.<\/a><\/p>\n\n\n\n<p>If you have issues using the germline sets in your work, please raise an issue in the github repo, or mail william@lees.org.uk.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The AIRR-C standard germline sets published in OGRDB use a new naming scheme: please see this poster for details. Because the format of these names may not be compatible with all current pipeline tools, we have released receptor-germline-tools: utilities that can convert to more compatible subgroup-identifier-allele form. We have also updated the FASTA files downloadable&hellip; <a class=\"more-link\" href=\"https:\/\/wordpress.vdjbase.org\/index.php\/ogrdb_news\/tools-for-working-with-germline-sets\/\">Continue reading <span class=\"screen-reader-text\">Tools for working with germline sets<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[13],"tags":[19],"class_list":["post-146","post","type-post","status-publish","format-standard","hentry","category-ogrdb_news","tag-howto","entry"],"_links":{"self":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/146","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/comments?post=146"}],"version-history":[{"count":6,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/146\/revisions"}],"predecessor-version":[{"id":193,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/posts\/146\/revisions\/193"}],"wp:attachment":[{"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/media?parent=146"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/categories?post=146"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/wordpress.vdjbase.org\/index.php\/wp-json\/wp\/v2\/tags?post=146"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}